chore: upgrade many dependencies and restructure tsconfigs (#757)

* chore: upgrade many dependencies and restructure tsconfigs

Summary:
- upgrade many dependencies
- remove dev dependencies from test-serializer and uhk-common
- created root tsconfig.json and test-serializer and uhk-common
  tsconfigs extends it
- fixed e2e test

* chore: upgrade more dependencies

packages/usb/package-lock.json

@@ -1,11 +1,14 @@
 {
-	"requires": true,
+	"name": "agent-usb",
+	"version": "1.0.0",
 	"lockfileVersion": 1,
+	"requires": true,
 	"dependencies": {
 		"@types/node": {
 			"version": "8.0.28",
 			"resolved": "https://registry.npmjs.org/@types/node/-/node-8.0.28.tgz",
-			"integrity": "sha512-HupkFXEv3O3KSzcr3Ylfajg0kaerBg1DyaZzRBBQfrU3NN1mTBRE7sCveqHwXLS5Yrjvww8qFzkzYQQakG9FuQ=="
+			"integrity": "sha512-HupkFXEv3O3KSzcr3Ylfajg0kaerBg1DyaZzRBBQfrU3NN1mTBRE7sCveqHwXLS5Yrjvww8qFzkzYQQakG9FuQ==",
+			"dev": true
 		},
 		"ansi-regex": {
 			"version": "2.1.1",
@@ -241,7 +244,8 @@
 		"es6-object-assign": {
 			"version": "1.1.0",
 			"resolved": "https://registry.npmjs.org/es6-object-assign/-/es6-object-assign-1.1.0.tgz",
-			"integrity": "sha1-wsNYJlYkfDnqEHyx5mUrb58kUjw="
+			"integrity": "sha1-wsNYJlYkfDnqEHyx5mUrb58kUjw=",
+			"dev": true
 		},
 		"escape-string-regexp": {
 			"version": "1.0.5",
@@ -657,6 +661,7 @@
 			"version": "0.2.2",
 			"resolved": "https://registry.npmjs.org/shx/-/shx-0.2.2.tgz",
 			"integrity": "sha1-CjBNAgsO3xMGrYFXDoDwNG31ijk=",
+			"dev": true,
 			"requires": {
 				"es6-object-assign": "1.1.0",
 				"minimist": "1.2.0",
@@ -787,7 +792,8 @@
 		"typescript": {
 			"version": "2.6.2",
 			"resolved": "https://registry.npmjs.org/typescript/-/typescript-2.6.2.tgz",
-			"integrity": "sha1-PFtv1/beCRQmkCfwPAlGdY92c6Q="
+			"integrity": "sha1-PFtv1/beCRQmkCfwPAlGdY92c6Q=",
+			"dev": true
 		},
 		"unbzip2-stream": {
 			"version": "1.2.5",